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Links and References


Secondary Structure Prediction Servers


PSIPRED

McGuffin L.J., Bryson K., Jones, D.T. (2000) The PSIPRED protein structure prediction server. Bioinformatics. 16, 404-405.

Article : https://doi.org/10.1093/bioinformatics/16.4.404


Buchan, D.W.A. & Minneci, Federico & Nugent, Timothy & Bryson, Kevin & Jones, David. (2013). Scalable web services for the PSIPRED Protein Analysis Workbench. Nucleic Acids Res. 41. W349-W357.

Article : https://doi.org/10.1093/nar/gkt381

Server link : http://bioinf.cs.ucl.ac.uk/psipred_new/


CFSSP: Chou and Fasman Secondary Structure Prediction server

Ashok Kumar, T. (2013). CFSSP: Chou and Fasman Secondary Structure Prediction server. WIDE SPECTRUM: Research Journal. 1(9):15-19.

Article : https://doi.org/10.5281/zenodo.50733

Server link : http://www.biogem.org/tool/chou-fasman/index.php


NSPA: Secondary consensus prediction

Deléage, Gilbert & Blanchet, C & Geourjon, Christophe. (1997). Protein structure prediction. Implications for the biologist. Biochimie. 79. 681-6. 10.1016/S0300-9084(97)83524-9.

Article : https://doi.org/10.1016/S0300-9084(97)83524-9

Server link : https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?page=/NPSA/npsa_seccons.html

Find more about all the prediction methods available on the server in its's reference section. Link : https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?page=/NPSA/npsa_references.html


Secondary Structure Assignment Server


Stride Web interface

Frishman D, Argos P. Knowledge-Based Protein Secondary Structure Assignment Proteins: Structure, Function, and Genetics 23:566-579 (1995).

Article : https://doi.org/10.1002/prot.340230412

Server link : http://webclu.bio.wzw.tum.de/cgi-bin/stride/stridecgi.py


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